PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 462880377
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Eragrostideae; Eragrostidinae; Eragrostis
Family B3
Protein Properties Length: 564aa    MW: 63441.4 Da    PI: 10.2587
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
462880377genomeTefView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B385.93.4e-2756143186
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                f+kv tpsdv+++  lv+pk++ae++         + ++  l++ed  g++W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++  
  462880377  56 FDKVVTPSDVGNR--LVIPKQYAEKYfpldaaA--NDKGLLLSFEDAGGKQWRFRYSYWNSSQSYVMTKGWSRFVKEKHLVAGDTVSFYRGA 143
                89*********75..9***********999643..346779************************************************653 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.5E-3951157IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.53E-2752142IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2154157IPR003340B3 DNA binding domain
CDDcd100171.19E-2354141No hitNo description
PfamPF023623.7E-2456145IPR003340B3 DNA binding domain
SMARTSM010193.3E-1956150IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 564 aa     Download sequence    Send to blast
MADASLTSSM ALSSGDGAGA LGSGGASASA SSMALSSGDG AGLLGKGMDP EKEHMFDKVV  60
TPSDVGNRLV IPKQYAEKYF PLDAAANDKG LLLSFEDAGG KQWRFRYSYW NSSQSYVMTK  120
GWSRFVKEKH LVAGDTVSFY RGAGEDARDR LFIDWKHHHR LGHGLDFRKV NAAAPARQVL  180
LSGSAVRLPG LTPPGPPLTA ASAKRLRLFG IEVDNYGESS HDPNELWLRM QRWQTPSDEY  240
SFHFDSPTSS PERVRLRQER NQILNHGSAS TDGHGKAAER WSAKRIAPRR FSKLEAWTQD  300
QQSDMFELTK VSKRQRIASN QLCDIAPWGK LKKYLIAIKF IAIMKAGVKI YQVRKQNWNH  360
VSASTSQFGK EAEILPAKRG FFGPEMWQGA KHLLENDLSE LTEVVKIPRL LASKQFRNIT  420
PREKLKKCLN AVKFVIRIQG SYTRPLLDPW RKFKFCLDVV KFVVRMKAGV RGHQRQKHYS  480
THGTSATDEL ATPKGIGLEA FCEPEAWSRD VETDGYEVTK VARRERLLKN VQSPTFNKPM  540
CPCFDAASNC RDLRFLKYDF LYKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A6e-405316611123DNA-binding protein RAV1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0884011e-125BT088401.1 Zea mays full-length cDNA clone ZM_BFc0175G08 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58337168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01030.11e-51B3 family protein